ABOUT THIS RECORDspecies: Aristolochia fimbriata
miRNA family: MIR160
source: microPC, original name: miR160
Taxonomy by NCBI:
Aristolochia fimbriata Aristolochia Aristolochiaceae Piperales magnoliids Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCCTGGCTCCCTGTATGCCA miRNA* GCGTGCGAGGAGCCAAGCA mismatches: 3 bulges: 0 |
pre-miRNA
TGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).)).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCCTGGCTCCCTGTATGCCACACGTAGAGACCCATCTGTTTATGATCGGCTACTGCGGGTGGCGTGCGAGGAGCCAAGCA
dot-bracket secondary structure
.((.(((((((.((((((((((.(((((((.((.(((.......))).)))).))))).)))))))))).))))))).)).
SIMILARITIES| miRBase vvi-MIR160c: 0.000000000004 PMRD vvi-miR160c: 0.000000000004 microPC miR160: 9e-41 | UniProt no hits RFAM mir-160: 0.00000000007 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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