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Species belonging to selected taxon:

Manihot esculenta



ABOUT THIS RECORD

ID: MNEST045202
species: Manihot esculenta
miRNA family: MIR159
source: microPC, original name: miR159

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTTGGATTGAAGGGAGCTCTA

miRNA*
 GAGCTCCTTGAAGTCCAATAG

mismatches: 3
bulges: 0
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pre-miRNA
 TGGAGCTCCTTGAAGTCCAATAGAGGATCTTGCTGGGTAGATTGAGCTGCTGAGCTATGGATCCCACAGCCCTATCTCATAATAAAGACTCTAGTCTTCT
TGGATAGGCTTGTGGCTTGCATATCTCAGGAGCTTCATTACCTCTTATGTTAGATCCTTGTTTGGATTGAAGGGAGCTCTA

dot-bracket secondary structure
(((((((((((..(((((((..((((((((.((.((((((...(((((.(((((.((((.(..((((((.((((((.((.....(((((....)))))..
)))))))).))))))..).)))).))))).)))))..)))))).....)).))))))))..)))))))..)))))))))))


SIMILARITIES
miRBase rco-MIR159: 1e-48

PMRD vvi-miR159c: 8e-31

microPC miR159: 5e-100		UniProt no hits

RFAM MIR159: 2e-47

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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