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Species belonging to selected taxon:
Cichorium intybus
,
Cichorium endivia
ABOUT THIS RECORD
ID:
MNEST045206
species:
Cichorium intybus
source:
microPC, original name:
miR167
Taxonomy by NCBI:
Cichorium intybus
Cichorium
Cichoriinae
Cichorieae
Cichorioideae
Asteraceae
Asterales
campanulids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
AAGCTGCCAGCATGATCT
miRNA*
GTCATCCTTGCAGCTT
mismatches:
2
bulges:
0
View larger
pre-miRNA
AAGCTGCCAGCATGATCT
GGTGATGCCAAACTGGGTGGCCTGTGTATGTTTGTCCATATATGAGTGGATAATGTAAAAGTTCTATATATAGTCAAATGTC
TTTGTGTGTGTTTTTGGTGATGTGTTGGTATCTGTTCATGGGTAGAGTAAGGAGAGGTTAACCAG
GTCATCCTTGCAGCTT
dot-bracket secondary structure
(((((((.((.(((((((
(((...(((...((.....(((((((.....((((((((......))))))))......((.((.((((((..(((((...(
.......)....)))))..)))))).))...))...)))))))......))....)))..)))))
))))).)).)))))))
SIMILARITIES
miRBase
vvi-MIR167a
:
0.000009
PMRD
vvi-miR167a
:
0.000009
microPC
miR167
:
5e-100
UniProt
no hits
RFAM
MIR167_1: 0.0002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
not a miRNA
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