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Species belonging to selected taxon:
Antirrhinum majus
,
Coffea canephora
,
Fraxinus excelsior
,
Ipomoea batatas
,
Mimulus guttatus
,
Mimulus guttatus var. nasutus
,
Mimulus lewisii
,
Nicotiana benthamiana
,
Nicotiana langsdorffii x Nicotiana sanderae
,
Nicotiana tabacum
,
Ocimum basilicum
,
Petunia axillaris subsp. axillaris
,
Salvia miltiorrhiza
,
Solanum habrochaites
,
Solanum lycopersicum
,
Solanum melongena
,
Solanum pennellii
,
Solanum torvum
,
Striga hermonthica
,
Triphysaria pusilla
,
Triphysaria versicolor
,
Capsicum annuum
,
Catharanthus roseus
,
Solanum tuberosum
,
Ipomoea nil
ABOUT THIS RECORD
ID:
MNEST045247
species:
Solanum tuberosum
miRNA family:
MIR168
source:
microPC, original name:
miR168
Taxonomy by NCBI:
Solanum tuberosum
Solanum
Solaneae
Solanoideae
Solanaceae
Solanales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TCGCTTGGTGCAGGTCGGGAC
miRNA*
CCCGCCTTGCATCAACTGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TCGCTTGGTGCAGGTCGGGAC
CTACCTCGCCGGCAACAATGGCGGTAGCTGACGGCGACGCCAGCGTACCGGTAAAAACTAATTTTTTACATGTTGTCTG
TGGCGTAGTTTGGGT
CCCGCCTTGCATCAACTGA
dot-bracket secondary structure
(((.((((((((((.((((((
(((.(((((((((((((....(((((((((.((....)).)))).)))))(((((((.....))))))).)))))))..
.)))).))..)))))
)))).)))))))))).)))
SIMILARITIES
miRBase
ptc-MIR168b
:
0.0001
PMRD
stu-miR168
:
7e-49
microPC
miR168
:
4e-72
UniProt
no hits
RFAM
no hits
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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