ABOUT THIS RECORDspecies: Sorghum bicolor
miRNA family: MIR444
source: microPC, original name: miR444
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGTGGCTTTCTTGCAAGTTG miRNA* ACTTGCAAGAAAGTCACAAAA mismatches: 2 bulges: 0 |
pre-miRNA
ACTTGCAAGAAAGTCACAAAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTG
dot-bracket secondary structure
(((((((((((((((((((...................)))))))))))))))))))..
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ACTTGCAAGAAAGTCACAAAATCAATTGCAGACCATACTTGTGGCTTTCTTGCAAGTTG
dot-bracket secondary structure
(((((((((((((((((((...................)))))))))))))))))))..
SIMILARITIES| miRBase ssp-MIR444b: 3e-21 PMRD tae-miR2024b: 0.00000004 microPC miR444: 8e-28 | UniProt no hits RFAM MIR444: 1e-17 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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