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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST045338
species: Oryza sativa
source: microPC, original name: miR162

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGATAAGCCTCTGCATCCA

miRNA*
 GGCGCAGTGGTTTATCGATC

mismatches: 4
bulges: 0
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pre-miRNA
 TGGGCGCAGTGGTTTATCGATCTCTTCCCTGCCTTGTGCTGCTCCGATCGATGCCCGTGCTGATTCTTGATAATATACAACGCAGGAATCGATCGATAAG
CCTCTGCATCCA

dot-bracket secondary structure
.((..((((.((((((((((((..((((.(((.(((((....((.(((((..((....)))))))...)).....))))).)))))))..))))))))))
)).))))..)).


SIMILARITIES
miRBase osa-MIR162b: 4e-59

PMRD osa-miR162m: 4e-59

microPC miR162: 4e-59		UniProt no hits

RFAM MIR162_2: 7e-58

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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