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Species belonging to selected taxon:

Oryza sativa



ABOUT THIS RECORD

ID: MNEST004540
species: Oryza sativa
miRNA family: miR166d
source: miRNEST

Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 GGAATGTTGTCTGGTTCAAGG

miRNA*
 TCGGACCAGGCTTCATTCCCC

mismatches: 3
bulges: 0
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pre-miRNA
 ATTGATAGTATGAAGCTATTTGCTTCTGAGTGGAATGTTGTCTGGTTCAAGGTCTCATACACCTTGTGGTTTTGAGGATGATTTGTGCAAGGTTTTTCAT
TCCTCTCATCCGTGGGATCTCGGACCAGGCTTCATTCCCCTCAGAGATAGCTTCAAAACATTAGATCT

dot-bracket secondary structure
..........((((((((((....((((((.((((((..(((((((((.((((((((.(((...)))((....((((((((.((......))....))).
)))))....)).)))))))).)))))))))..)))))).)))))))))))))))).............


SIMILARITIES
miRBase osa-MIR166a: 8e-74

PMRD osa-miR166a: 8e-74

microPC miR166: 4e-54		UniProt no hits

RFAM mir-166: 5e-63		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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deep sequencing data evidence




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