ABOUT THIS RECORDspecies: Triphysaria pusilla
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Triphysaria pusilla Triphysaria Rhinantheae Orobanchaceae Lamiales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGAACGGCTCAATCAAA mismatches: 1 bulges: 0 |
pre-miRNA
GATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GATGTTGGAACGGCTCAATCAAATCAAATCTCCCAAGAATTGGGTCCTTTAGTTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
((((((((.(((((((((((((((.(((...((((.....))))...))).))))))))))))))).))))))))
SIMILARITIES| miRBase rco-MIR171e: 4e-21 PMRD vvi-miR171i: 6e-20 microPC miR171: 3e-37 | UniProt no hits RFAM MIR171_1: 7e-20 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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