ABOUT THIS RECORDspecies: Fragaria vesca
source: microPC, original name: miR159
Taxonomy by NCBI:
Fragaria vesca Fragaria Potentilleae Rosodae Rosoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTTGGATTGAAGGGAGCTCT miRNA* AGCTCCTTGAAGTCCAATAG mismatches: 3 bulges: 0 |
pre-miRNA
GGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAGG
CTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).))))))
..)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
GGAGCTCCTTGAAGTCCAATAGAAGATGTTGCTAGGTTGATTGAGCTGCTGAGCTATGAATTCCACACTTCTATCTCTGTTTTTTGATAAAGATGATAGG
CTTGTGGCTTGCATACCTCAGGAGCTGCATTACCTGAGTTGCATCATGTTTTGGATTGAAGGGAGCTCT
dot-bracket secondary structure
((((((((((..(((((((.(.(.(((((.(((((((....((((((.(((((.((((....(((((..(((((((((............))).))))))
..)))))....)))).))))).)))).))..)))).))).))))).).).)))))))..))))))))))
SIMILARITIES| miRBase ptc-MIR159b: 0.000000000000002 PMRD ptc-miR159b: 0.000000000000002 microPC miR159: 6e-93 | UniProt no hits RFAM MIR159: 7e-16 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
