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Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST045449
species: Pinus taeda
miRNA family: MIR949
source: microPC, original name: miR949

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTCCGGGAATCCAATGCGCC

miRNA*
 TGTATTGATTTCCGGGGA

mismatches: 0
bulges: 1
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pre-miRNA
 ATCTCCGGGAATCCAATGCGCCTTCCTCTTGAACGCCTTTCAACGCGCGTGCTGTGCGTGAAAACGCGTTTAGGAGGAAGGTGTATTGATTTCCGGGGA

dot-bracket secondary structure
)((((((((((((.((((((((((((((((((((((.(((((.(((((.....))))))))))..))))))))))))))))))))))))))))))))))


SIMILARITIES
miRBase pta-MIR949: 8.0E-51

PMRD pta-miR949: 8.0E-51

microPC miR949: 3.0E-44		UniProt no hits

RFAM no hits

Identical with: pta-miR949 from PMRD (MNEST051577), pta-MIR949 from miRBase

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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