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Species belonging to selected taxon:

Brassica napus, Brassica oleracea var. alboglabra, Brassica rapa, Brassica oleracea



ABOUT THIS RECORD

ID: MNEST045484
species: Brassica oleracea var. alboglabra
miRNA family: MIR171
source: microPC, original name: miR171

Taxonomy by NCBI:
Brassica oleracea var. alboglabra Brassica oleracea Brassica Brassicaceae Brassicales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGAGCCGTGCCAATATCACT

miRNA*
 CGATATTGGTACGGTTGAATC

mismatches: 4
bulges: 0
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pre-miRNA
 AGCGATATTGGTACGGTTGAATCGAATCAAATCACTCTATCTTTCTCTTGGGTCAGTTGATTTGATTGAGCCGTGCCAATATCACT

dot-bracket secondary structure
...(((((((((((((((.(((((((((((...((((............))))...))))))))))).)))))))))))))))...


SIMILARITIES
miRBase ptc-MIR171i: 0.00000002

PMRD ptc-miR171i: 0.00000002

microPC miR171: 2e-42		UniProt no hits

RFAM MIR171_1: 0.0000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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