ABOUT THIS RECORDspecies: Prunus persica
miRNA family: MIR171
source: microPC, original name: miR171
Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATATC miRNA* TGTTGGCGTGGCTCAATCAAA mismatches: 0 bulges: 0 |
pre-miRNA
CGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATC
dot-bracket secondary structure
)((((((((((((((((((((((((.(((...(((((.......)))))...))).))))))))))))))))))))))))
SIMILARITIES| miRBase vvi-MIR171i: 6.0E-14 PMRD ppe-miR171: 1.0E-39 microPC miR171: 1.0E-39 | UniProt no hits RFAM 1MIR171_1: 1.0E-12 |
Identical with: ppe-miR170 from PMRD (MNEST051345), ppe-miR171 from PMRD |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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