miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cryptomeria japonica, Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii

ABOUT THIS RECORD

ID: MNEST045503
species: Cryptomeria japonica
source: microPC, original name: miR394

Taxonomy by NCBI:
Cryptomeria japonica Cryptomeria Cupressaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
CTGTTGTTCTCTCTTTGT

miRNA*
AAACTGAGAGAGCTTAGGTG

mismatches: 3
bulges: 2

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pre-miRNA
ACAAACTGAGAGAGCTTAGGTGGTCATCGATGCTATCAAGACCCTGTTGTTCTCTCTTTGT

dot-bracket secondary structure
(((((..((((((((...((.((((...(((...)))..))))))...)))))))))))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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