miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus



ABOUT THIS RECORD

ID: MNEST045509
species: Cichorium intybus
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Cichorium intybus Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCCCC

miRNA*
 AGGGATGTTGTCTGGCTCCAGGCC

mismatches: 2
bulges: 3
View larger
pre-miRNA
 GGAGGGATGTTGTCTGGCTCCAGGCCACTAGAGAACCTTATGGATCTCTCGATCTATGGATCTCTTTTCTCTCTATATATATTACATAATATATATGTAT
ATCATCATAGTCAACGCATCTGATTTCATTGCCTTCGTTGACTAGAGATGGTGATAGATCATTCTTGATCTGGTGTCGTCGGACCAGGCTTCATTCCCC

dot-bracket secondary structure
((.((((((..((((((.(((.(((.((.(((((.((..(((((((....))))))))).)))))........((((((((((....))))))))))..(
((((((.(((((((((((..((....)).)))....))))))))..))))))).(((((((....)))))))..)).))))))))))))..))))))))


SIMILARITIES
miRBase vvi-MIR166e: 0.000000003

PMRD vvi-miR166e: 0.000000003

microPC miR166: 3e-49		UniProt no hits

RFAM mir-166: 0.00000005

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record




Liczniki na strone;