miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa



ABOUT THIS RECORD

ID: MNEST045517
species: Lactuca sativa
source: microPC, original name: miR159

Taxonomy by NCBI:
Lactuca sativa Lactuca Lactucinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGGGTGAAGGGAGCTCCT

miRNA*
 GAGCTCTCTATCGCCTCGACC

mismatches: 1
bulges: 1
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pre-miRNA
 TGGAGCTCTCTATCGCCTCGACCCTGAAAGGAAATCGATCATGGTGGTTCATGGCTGCTCTTTCATGAATGCTTGTAGGTGCACCAATGTTGTTGTAGTGT
GCATTCTAAGGTTAGCATGAAGGTGGAGCCATGGTTTGATCATCTTTTTGGGATTGGGGTGAAGGGAGCTCCT

dot-bracket secondary structure
)((((((((((.(((((((((.((..((((((....(((((.......((((((((.(.((((((((...((((.((((((((((.((......)).).))
))).))))))))...)))))))).).))))))))..))))).))))))..)).))))))))))))))))))).


SIMILARITIES
miRBase ptc-MIR159e: 2.0E-6

PMRD ptc-miR159e: 2.0E-6

microPC miR159: 1.0E-94		UniProt no hits

RFAM 9MIR159: 4.0E-5

Identical with: miR319 from microPC (MNEST046103)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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