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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST045519
species: Populus tremula x Populus alba
miRNA family: MIR398
source: microPC, original name: miR398

Taxonomy by NCBI:
Populus tremula x Populus alba Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGTGTTCTCAGGTCGCCCCTG

miRNA*
 GGAGCGACCTGAAATCACATG

mismatches: 4
bulges: 0
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pre-miRNA
 CAGGAGCGACCTGAAATCACATGTGGGCTGCACGGCAACATGTGTTCTCAGGTCGCCCCTG

dot-bracket secondary structure
((((.(((((((((...(((((((..(((....))).)))))))...))))))))).))))


SIMILARITIES
miRBase ptc-MIR398c: 0.000000000003

PMRD ptc-miR398c: 0.000000000003

microPC miR398: 9e-28		UniProt no hits

RFAM MIR398: 1e-27

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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