ABOUT THIS RECORDspecies: Centaurea solstitialis
source: microPC, original name: miR530
Taxonomy by NCBI:
Centaurea solstitialis Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGCATTTGCACCTGCACCTT miRNA* GGTGCAGGACAAGTGCA mismatches: 2 bulges: 1 |
pre-miRNA
TGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAGGT
GGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCA
dot-bracket secondary structure
.(((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).))))
)))))))...))))))))))))))))))))).))))))).
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGCATTTGCACCTGCACCTTTCTACCTTTCTTCTCCATCTTCATCTTCTTCACCACCATCATAAGACAATGTGTGTGTGTGTGTGTGTGTGTGAGTAGGT
GGAGAGGTTAAGAAGAAAAGAAGGGTGCAGGACAAGTGCA
dot-bracket secondary structure
.(((((((..(((((((((((((...((((((((((.(((((((((..(((((((((((((((..(((.....))).)))).))).))).))))).))))
)))))))...))))))))))))))))))))).))))))).
SIMILARITIES| miRBase ptc-MIR530a: 0.0004 PMRD ptc-miRf11026-akr: 0.0004 microPC miR1030: 2e-33 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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