ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIRf541
source: miRNEST
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCTCACATGTCAGTGGCTCAA miRNA* GATTCATTGGCATGTGGATC mismatches: 1 bulges: 1 |
pre-miRNA
TCTTTGGAAAGCAGATCCCTCTAACTTAACTGCACATGCAGTTGATTCATTGGCATGTGGATCCCGCTTTGCTATGTCTCACATGTCAGTGGCTCAATTT
AAATGTAGTTAAGCCAGAGGATCCCTTTCTTATGAAA
dot-bracket secondary structure
((...((((((..(((((.(((..((((((((((.....((((((.((((((((((((((((...((...))...))).))))))))))))).)))))).
...))))))))))..)))))))).))))))...))..
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
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TCTTTGGAAAGCAGATCCCTCTAACTTAACTGCACATGCAGTTGATTCATTGGCATGTGGATCCCGCTTTGCTATGTCTCACATGTCAGTGGCTCAATTT
AAATGTAGTTAAGCCAGAGGATCCCTTTCTTATGAAA
dot-bracket secondary structure
((...((((((..(((((.(((..((((((((((.....((((((.((((((((((((((((...((...))...))).))))))))))))).)))))).
...))))))))))..)))))))).))))))...))..
SIMILARITIES| miRBase no hits PMRD osa-miRf11144-akr: 0.000002 microPC no hits | UniProt no hits RFAM no hits | most similar mature miRNAs |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record
