ABOUT THIS RECORDspecies: Tamarix hispida
source: microPC, original name: miR169
Taxonomy by NCBI:
Tamarix hispida Tamarix Tamaricaceae Caryophyllales core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA AGCCAAGGATGACTTGCCT miRNA* GCAGTCTCCTTGGCT mismatches: 0 bulges: 2 |
pre-miRNA
AGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCACCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCT
dot-bracket secondary structure
(((((((((.((((.(((((((..(((((.(((.(((((.....))))).))).)))))..))))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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AGCCAAGGATGACTTGCCTACTCTTCTTTTCATCGTGGTAGTGAATCACCATGTAGGGGTAGGTAGGCAGTCTCCTTGGCT
dot-bracket secondary structure
(((((((((.((((.(((((((..(((((.(((.(((((.....))))).))).)))))..))))))))))))))))))))
SIMILARITIES| miRBase sly-MIR169d: 0.00001 PMRD sly-miR169d: 0.00001 microPC miR169: 9e-41 | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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