ABOUT THIS RECORDspecies: Sorghum bicolor
source: microPC, original name: miR156
Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA GACAGAAGAGAGTGAGCAC miRNA* GCTCACTTCTCTTTCGGTC mismatches: 1 bulges: 2 |
pre-miRNA
GACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGCCGCGTGCTCACTTCTCTTTCGGTC
dot-bracket secondary structure
(((.(((((((((((((((.(((((.(((((...((((...))))...)))))..))))).)))))))).)))))))..)))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GACAGAAGAGAGTGAGCACACGGCGCGACGAACGGCATAATATGTATGTCGTCCTCGCCGCGTGCTCACTTCTCTTTCGGTC
dot-bracket secondary structure
(((.(((((((((((((((.(((((.(((((...((((...))))...)))))..))))).)))))))).)))))))..)))
SIMILARITIES| miRBase sbi-MIR156a: 6e-39 PMRD sbi-miR157: 2e-41 microPC miR156: 2e-41 | UniProt no hits RFAM mir-156: 1e-37 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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