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Species belonging to selected taxon:

Antirrhinum majus, Coffea canephora, Fraxinus excelsior, Ipomoea batatas, Mimulus guttatus, Mimulus guttatus var. nasutus, Mimulus lewisii, Nicotiana benthamiana, Nicotiana langsdorffii x Nicotiana sanderae, Nicotiana tabacum, Ocimum basilicum, Petunia axillaris subsp. axillaris, Salvia miltiorrhiza, Solanum habrochaites, Solanum lycopersicum, Solanum melongena, Solanum pennellii, Solanum torvum, Striga hermonthica, Triphysaria pusilla, Triphysaria versicolor, Capsicum annuum, Catharanthus roseus, Solanum tuberosum, Ipomoea nil



ABOUT THIS RECORD

ID: MNEST045596
species: Catharanthus roseus
miRNA family: MIR169
source: microPC, original name: miR169

Taxonomy by NCBI:
Catharanthus roseus Catharanthus Vinceae Rauvolfioideae Apocynaceae Gentianales lamiids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CAGCCAAGGATGACTTGCCGA

miRNA*
 GGCAAGTTGTCTTTGGCT

mismatches: 3
bulges: 0
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pre-miRNA
 CAGCCAAGGATGACTTGCCGACTGTTTTGCCGAGCGCGGAAATAAAATGCAGCTTTCTCTCTCTCTCTCTCTGTATATTTGCCGCCGTACGTATTTATAC
GAACTCCTCGGCAAGTTGTCTTTGGCT

dot-bracket secondary structure
.(((((((((..(((((((((..............(((((((((...(((((..................)))))))))).)))).((.((((....)))
).))...)))))))))..)))))))))


SIMILARITIES
miRBase vvi-MIR169g: 0.000006

PMRD vvi-miR169g: 0.000006

microPC miR169: 1e-37		UniProt no hits

RFAM MIR169_2: 0.00003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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