miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Citrus aurantium, Citrus reticulata, Citrus sinensis, Citrus unshiu, Paullinia cupana var. sorbilis, Citrus clementina



ABOUT THIS RECORD

ID: MNEST000456
species: Citrus unshiu
miRNA family: MIR408
source: miRNEST

Taxonomy by NCBI:
Citrus unshiu Citrus Rutaceae Sapindales malvids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATGCGCTGCCTCTTCCCTGGC

miRNA*
 CGGGGAACAGGCAGAGCATGG

mismatches: 4
bulges: 0
View larger
pre-miRNA
 AGACAAAAGACGGGGAACAGGCAGAGCATGGATGGAACCATTAACAGGTTCTCTGTTTTGGCTCCTCCCATGCGCTGCCTCTTCCCTGGCTCTCTGC

dot-bracket secondary structure
..........(((((((.((((((.((((((..(((.(((..((((((...)))))).))).)))..)))))).)))))).))))))).........


SIMILARITIES
miRBase csi-MIR408: 8e-48

PMRD cpt-miR408: 8e-48

microPC miR408: 0.000000000000001		UniProt no hits

RFAM MIR408: 0.000000000000006		most similar mature miRNAs

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
Source sequences
download this record




Liczniki na strone;