miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Cucumis melo subsp. melo, Euonymus alatus, Euphorbia esula, Fagus sylvatica, Fragaria vesca, Fragaria x ananassa, Glycine soja, Glycyrrhiza uralensis, Hevea brasiliensis, Humulus lupulus, Jatropha curcas, Juglans hindsii x Juglans regia, Linum usitatissimum, Lotus japonicus, Manihot esculenta, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Prunus armeniaca, Prunus persica, Quercus petraea, Quercus robur, Trifolium pratense, Bruguiera gymnorhiza, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Populus trichocarpa, Phaseolus vulgaris, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST045658
species: Prunus persica
source: microPC, original name: miR171

Taxonomy by NCBI:
Prunus persica Prunus Amygdaleae Spiraeoideae Rosaceae Rosales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TTGAGCCGTGCCAATATCA

miRNA*
ATGTTGGCGTGGCTCAATC

mismatches: 1
bulges: 0

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pre-miRNA
ATGATGTTGGCGTGGCTCAATCAAATCAAACTTCTCAACTGTTTATTGGGTCCTTTAATTTGATTGAGCCGTGCCAATATCA

dot-bracket secondary structure
).((((((((((((((((((((((((.(((...(((((.......)))))...))).)))))))))))))))))))))))).

UniProt no hits

RFAM 1MIR171_1: 3.0E-13

Identical with: ppe-miR170 from PMRD (MNEST051345), ppe-miR171 from PMRD

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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