ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR535
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGACGACGAGAGAGAGCAC miRNA* GCTCTCTGCCGTCGTCA mismatches: 3 bulges: 0 |
pre-miRNA
TGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAGTGTGCTCTCTGCCGTCGTCA
dot-bracket secondary structure
.(((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))))))))))))..))))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TGACGACGAGAGAGAGCACACTTGTTAGCATTCATGCTGTGGTCATGGGCGTCTATAAGTGTGCTCTCTGCCGTCGTCA
dot-bracket secondary structure
.(((((((..(((((((((((((((..((.(((((((....).)))))).))..)))))))))))))))..))))))).
SIMILARITIES| miRBase rco-MIR535: 0.0000009 PMRD rco-miR535: 0.0000009 microPC miR535: 0.00006 | UniProt no hits RFAM MIR535: 0.00000002 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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