miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Euphorbia esula, Hevea brasiliensis, Jatropha curcas, Linum usitatissimum, Manihot esculenta, Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Bruguiera gymnorhiza, Populus trichocarpa, Ricinus communis, Populus trichocarpa x Populus deltoides

ABOUT THIS RECORD

ID: MNEST045736
species: Manihot esculenta
source: microPC, original name: miR169

Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
GCCAAGGATGACTTGCCTG

miRNA*
GGCAGTCTCCTTGGC

mismatches: 0
bulges: 2

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pre-miRNA
GCCAAGGATGACTTGCCTGCAGCTTCACGCAGATTTTTCATCAATTTGCATGAAATAACGCGGCTAACTAAGGTTTTGAATATGTATGTGGTTTACAGGC
AGTCTCCTTGGC

dot-bracket secondary structure
((((((((.((((.(((((.((((.((..((....(((((((.....).))))))...((..(((......)))..))....))..)).))))..)))))
))))))))))))

UniProt no hits

RFAM MIR169_5: 0.0001

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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