ABOUT THIS RECORDspecies: Oryza sativa
miRNA family: MIR169
source: microPC, original name: miR169
Taxonomy by NCBI:
Oryza sativa Oryza Oryzeae Ehrhartoideae BEP clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CAGCCAAGGATGACTTGCCGG miRNA* GGCAAGTCTGTCCTTGGCT mismatches: 1 bulges: 1 |
pre-miRNA
CAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCT
dot-bracket secondary structure
.((((((((((((((((((((((.......((.((((....(((((...)))))....)))).))...)))))))))))).))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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deep sequencing data evidence
CAGCCAAGGATGACTTGCCGGCTCCTGGTATTGGGGGAATCTCAGCTTTGCTGAAGCGCCTTGGAGTTAGCCGGCAAGTCTGTCCTTGGCT
dot-bracket secondary structure
.((((((((((((((((((((((.......((.((((....(((((...)))))....)))).))...)))))))))))).))))))))))
SIMILARITIES| miRBase osa-MIR169c: 1e-46 PMRD osa-miRf10630-akr: 1e-46 microPC miR169: 1e-46 | UniProt no hits RFAM MIR169_2: 2e-45 |
MOREmiRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
download this record
deep sequencing data evidence
