miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Coffea canephora
ABOUT THIS RECORD
ID:
MNEST045845
species:
Coffea canephora
source:
microPC, original name:
miR396
Taxonomy by NCBI:
Coffea canephora
Coffea
Coffeeae
Ixoroideae
Rubiaceae
Gentianales
lamiids
asterids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTCCACATCTTTCTTGAACT
miRNA*
TTCAATAAAGCTGTGGGA
mismatches:
2
bulges:
0
View larger
pre-miRNA
TTCCACATCTTTCTTGAACT
GCATCTGGCTTTATCACTCCATGAATATGATTCTTGCGAGACTTCGGAGGAGGTGACGCGATGATGGCGG
TTCAATAAAG
CTGTGGGA
dot-bracket secondary structure
(((((((.((((.(((((((
((((((.((.(((((.(((((.((((...)))).)).))).(....)....))))).)).).))).))))
))))).))))
.)))))))
SIMILARITIES
miRBase
bdi-MIR396d
:
0.000005
PMRD
zma-miR396l
:
0.00002
microPC
miR396
:
1e-56
UniProt
no hits
RFAM
MIR396: 0.0004
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record