ABOUT THIS RECORDspecies: Amborella trichopoda
source: microPC, original name: miR396
Taxonomy by NCBI:
Amborella trichopoda Amborella Amborellaceae Amborellales basal Magnoliophyta Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCCACAGGCTTTCTTGAAC miRNA* TCAAGAAATCTGTGGA mismatches: 0 bulges: 1 |
pre-miRNA
TCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTGAGTAACAGGTTCAAGAAATCTGTGGA
dot-bracket secondary structure
((((((((.((((((((((.((.(((((.((((.((.((((...((....))...))))..))..))))))))).)).))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TCCACAGGCTTTCTTGAACATGGTATTCCGACGGGCCCTCTTCGAGTTAGCTATCAGAGATGCAATGTTGAGTAACAGGTTCAAGAAATCTGTGGA
dot-bracket secondary structure
((((((((.((((((((((.((.(((((.((((.((.((((...((....))...))))..))..))))))))).)).))))))))))))))))))
SIMILARITIES| miRBase no hits PMRD no hits microPC no hits | UniProt no hits RFAM no hits |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
download this record
