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Species belonging to selected taxon:

Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Zea mays, Sorghum bicolor



ABOUT THIS RECORD

ID: MNEST045857
species: Sorghum bicolor
miRNA family: MIR166
source: microPC, original name: miR166

Taxonomy by NCBI:
Sorghum bicolor Sorghum Andropogoneae Panicoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCGGACCAGGCTTCATTCC

miRNA*
 AATGTTGTCTGGTTCAAGG

mismatches: 3
bulges: 0
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pre-miRNA
 GGAATGTTGTCTGGTTCAAGGTCTCGCTTGTGATTTAAGGATGATTTGTGCATGCGTAATTTTTATTCCTTGAATCTATGAGATCTCGGACCAGGCTTCA
TTCC

dot-bracket secondary structure
((((((..(((((((((.((((((((.....(((((((((((((....(((....)))....))).))))))))))..)))))))).)))))))))..))
))))


SIMILARITIES
miRBase sbi-MIR166a: 2e-54

PMRD sbi-miR166a: 2e-54

microPC miR166: 2e-54		UniProt no hits

RFAM mir-166: 4e-53

Identical with: sbi-MIR166a from miRBase (MNEST042508)

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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