miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST045859
species: Centaurea maculosa
source: microPC, original name: miR399

Taxonomy by NCBI:
Centaurea maculosa Centaurea Centaureinae Cardueae Carduoideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGCCAAACAAGAATTGCCCC

miRNA*
GGTCTTTGTCTTGGTTAAG

mismatches: 1
bulges: 5

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pre-miRNA
GGGGTCTTTGTCTTGGTTAAGAGGTTCCATATTTTTTGCCAAACAAGAATTGCCCC

dot-bracket secondary structure
(((((.(((((.(((((.(((((((.....)))))))))))))))))....)))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC miR399: 7e-25

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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