ABOUT THIS RECORDspecies: Eragrostis curvula
source: microPC, original name: miR169
Taxonomy by NCBI:
Eragrostis curvula Eragrostis Eragrostidinae Eragrostideae Chloridoideae PACCAD clade Poaceae Poales commelinids Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TAGCCAATGATGACTTGCCT miRNA* GCAGTCCCCTTGGCTAG mismatches: 2 bulges: 2 |
pre-miRNA
GTAGCCAATGATGACTTGCCTGTGTCGACCTCCGCGAAGGATCATCGTATCATCCAACGATGAGCCTTCATGTGGTCTCATGGGCAGTCCCCTTGGCTAG
dot-bracket secondary structure
)(((((((.(..((((.(((((((..((((..((.(((((.(((((((........))))))).))))).)).)))).)))))))))))..)))))))).
SIMILARITIES
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miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GTAGCCAATGATGACTTGCCTGTGTCGACCTCCGCGAAGGATCATCGTATCATCCAACGATGAGCCTTCATGTGGTCTCATGGGCAGTCCCCTTGGCTAG
dot-bracket secondary structure
)(((((((.(..((((.(((((((..((((..((.(((((.(((((((........))))))).))))).)).)))).)))))))))))..)))))))).
SIMILARITIES| miRBase sbi-MIR169n: 3.0E-7 PMRD sbi-miR169n: 3.0E-7 microPC miR169: 2.0E-5 | UniProt no hits RFAM 5MIR169_5: 5.0E-6 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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