miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Agrostis stolonifera, Allium cepa, Oryza sativa, Avena barbata, Avena sativa, Curcuma longa, Cynodon dactylon, Dioscorea alata, Elaeis guineensis, Eragrostis curvula, Festuca arundinacea, Festuca pratensis, Hordeum vulgare, Hordeum vulgare subsp. spontaneum, Leymus cinereus x Leymus triticoides, Lolium perenne, Musa ABB Group, Panicum virgatum, Pseudoroegneria spicata, Saccharum hybrid cultivar CoS 767, Saccharum hybrid cultivar SP70-1143, Saccharum officinarum, Sorghum propinquum, Triticum monococcum, Triticum turgidum subsp. durum, Zingiber officinale, Cenchrus ciliaris, Brachypodium distachyon, Zea mays, Triticum aestivum, Sorghum bicolor

ABOUT THIS RECORD

ID: MNEST045928
species: Allium cepa
miRNA family: MIR444
source: microPC, original name: miR444

Taxonomy by NCBI:
Allium cepa Allium Allieae Allioideae Amaryllidaceae Asparagales Liliopsida Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TGTTGTCTCAAACTTGCTGCC

miRNA*
CAGCCAGTTTGAGATAACAAT

mismatches: 1
bulges: 0

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pre-miRNA
GGCAGCCAGTTTGAGATAACAATTGTGTATTTTGCAAAGAATTGATTGCTCAACTCCATGGGAGGCTGTAGTGCCAAATGTGATGTATTCTAACTGTTGT
CTCAAACTTGCTGCC

dot-bracket secondary structure
((((((.((((((((((((((.(((.((((.(..((..((.((((....)))).)).......(((......)))...))..).))))..))).))))))
)))))))).))))))

SIMILARITIES

miRBase no hits

PMRD no hits

microPC no hits

UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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