miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST045999
species: Pinus taeda
source: microPC, original name: miR482

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TCTTCCCTACTCCTCCCATT

miRNA*
 TGGAAGGATAGGGTAAGACT

mismatches: 3
bulges: 2
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pre-miRNA
 TGGAAGGATAGGGTAAGACTAAGGTTAAGGAGAAACTCTGCTTCATTAATTCTCTGCTCCAGTCTTCCCTACTCCTCCCATT

dot-bracket secondary structure
(((.(((((((((.((((((..((....((((((...............))))))...))))))))))))).)))).)))..


SIMILARITIES
miRBase pta-MIR482a: 2e-41

PMRD pta-miR482a: 2e-41

microPC miR482: 6e-39		UniProt no hits

RFAM no hits

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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