miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST046030
species: Pinus taeda
miRNA family: MIR1313
source: microPC, original name: miR1313

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TACCACTGAAATTATTGTTCG

miRNA*
AACAATAATTTCAGTGGAA

mismatches: 4
bulges: 0

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pre-miRNA
TACCACTGAAATTATTGTTCGAAATAACACCTGCAATTCATGGATGTATACTGCCGTGGTATCGCCAGTCTAACCTAGTTGCAGGGTTGCAACACATGGC
ATGGTGGGGGATCTATTGGGCAATAACCAAGTTGCATGGGTGTATTTATCCAACAATAATTTCAGTGGAA


dot-bracket secondary structure
..(((((((((((((((((..(((((.(((((((((((..(((.(((....((((((((.(((.((..((...((..(((((......)))))....)).
..))..)).)))))))..))))))).)))))))))..))))))))))....)))))))))))))))))..



SIMILARITIES
miRBase pta-MIR1313: 2e-65

PMRD pta-miR1313: 2e-65

microPC no hits
UniProt no hits

RFAM no hits

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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