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Species belonging to selected taxon:

Populus deltoides, Populus euphratica, Populus nigra, Populus tremula, Populus tremula x Populus alba, Populus tremula x Populus tremuloides, Populus tremuloides, Populus trichocarpa x Populus nigra, Populus x canadensis, Populus trichocarpa, Populus trichocarpa x Populus deltoides



ABOUT THIS RECORD

ID: MNEST046043
species: Populus trichocarpa x Populus deltoides
source: microPC, original name: miR396

Taxonomy by NCBI:
Populus trichocarpa x Populus deltoides Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTCCACAGCTTTCTTGAAC

miRNA*
 TCAAGAAAGCTGTGGGA

mismatches: 1
bulges: 0
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pre-miRNA
 TTCCACAGCTTTCTTGAACTTCTTTGCCTTGCTTAATCTGTGTATATATAGATCACTACATGTACAGCTCCTATATATATAAATATATGTATGTATAGCG
CCATGGAAGCTCAAGAAAGCTGTGGGA

dot-bracket secondary structure
(((((((((((((((((.(((((..((.............(((((((.(((....))).)))))))....(((((((((((......))))))))))).)
)...))))).)))))))))))))))))


SIMILARITIES
miRBase ptc-MIR396e: 1e-34

PMRD ptc-miRf11357-akr: 1e-34

microPC miR396: 1e-34		UniProt no hits

RFAM MIR396: 3e-33

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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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