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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Limnanthes alba
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Tropaeolum majus
,
Carica papaya
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046053
species:
Brassica rapa
source:
microPC, original name:
miR160
Taxonomy by NCBI:
Brassica rapa
Brassica
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCTGGCTCCCTGTATGCC
miRNA*
CGTATGAGGAGCCAAGC
mismatches:
3
bulges:
0
View larger
pre-miRNA
GCCTGGCTCCCTGTATGCC
ATACACTAAGTTCATCGATCCTCGGCGACCTCCGTGGATGG
CGTATGAGGAGCCAAGC
dot-bracket secondary structure
((.(((((((..(((((((
((.(((..((.((..((.....))..)).))..))).))))
)))))..))))))).))
SIMILARITIES
miRBase
bra-MIR160a
:
0.000000000000004
PMRD
bra-miR160a
:
0.000000000000004
microPC
miR160
:
2e-38
UniProt
no hits
RFAM
mir-160: 0.00000000002
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
download this record