ABOUT THIS RECORDspecies: Helianthus petiolaris
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Helianthus petiolaris Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCCCC miRNA* GGAATGTTGTCTGGCTCGAGA mismatches: 4 bulges: 0 |
pre-miRNA
GGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATT
AAAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).))))
))))))).)))))))))).).)))..))))))..))))))))
SIMILARITIES
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGGGAATGTTGTCTGGCTCGAGACCACAAGAAAGCTTCAATCTTTATAATCTTTATGTTACATAATCACATAATTGATCAATCTTTGTTGATCAATGATT
AAAGATTAGAATCTTGTGTTGTCGGACCAGGCTTCATTCCCC
dot-bracket secondary structure
((((((((..((((((..(((.(.(((((((....(((((((((((..(((..(((((.........))))).(((((((((....))))))))).))))
))))))).)))))))))).).)))..))))))..))))))))
SIMILARITIES| miRBase sly-MIR166b: 0.00000003 PMRD sly-miR166b: 0.00000003 microPC miR166: 1e-75 | UniProt no hits RFAM mir-166: 0.0000005 |
MOREmiRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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