miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Picea abies, Picea engelmannii x Picea glauca, Picea glauca, Picea sitchensis, Pinus banksiana, Pinus contorta, Pinus pinaster, Pinus taeda, Pseudotsuga menziesii var. menziesii



ABOUT THIS RECORD

ID: MNEST046072
species: Pinus taeda
miRNA family: MIR159
source: microPC, original name: miR159

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TTGGATTGAAGAGAGCTCCC

miRNA*
 GAGCTTTCTTCAGTCCAACG

mismatches: 0
bulges: 0
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pre-miRNA
 GGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGG
CAAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCCC

dot-bracket secondary structure
((((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..)
))))))).))).)).)))))..))).))).).)))))).)))..).))))))..))))))))))))))))))))


SIMILARITIES
miRBase pta-MIR159b: 7e-96

PMRD pta-miR159b: 7e-96

microPC miR159: 7e-96		UniProt no hits

RFAM no hits

Identical with: pta-miR159b from PMRD (MNEST051554)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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