ABOUT THIS RECORDspecies: Medicago truncatula
miRNA family: MIR166
source: microPC, original name: miR166
Taxonomy by NCBI:
Medicago truncatula Medicago Trifolieae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TCGGACCAGGCTTCATTCC miRNA* AATGTTGGCTGGCTCGAGG mismatches: 5 bulges: 0 |
pre-miRNA
GGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
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GGAATGTTGGCTGGCTCGAGGCTTTTCAGTTTCACAAAGGAAGTTCAGTCTTAATTGTATGAACTATAAGGCTTCGGACCAGGCTTCATTCC
dot-bracket secondary structure
((((((..(.((((..(((((((((..(((((.((((...(((......)))..))))..)))))..)))))))))..)))).)..))))))
SIMILARITIES| miRBase mtr-MIR166e: 3e-47 PMRD mtr-miR166b: 3e-47 microPC miR166: 3e-47 | UniProt no hits RFAM mir-166: 5e-46 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
degradome data
download this record
