miRNEST 2.0, an integrative microRNA resource

miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Barnadesia spinosa, Cichorium intybus, Gerbera hybrid cultivar, Guizotia abyssinica, Helianthus argophyllus, Helianthus ciliaris, Helianthus exilis, Helianthus paradoxus, Helianthus petiolaris, Helianthus tuberosus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Panax ginseng, Parthenium argentatum, Taraxacum kok-saghyz, Taraxacum officinale, Zinnia violacea, Carthamus tinctorius, Centaurea maculosa, Centaurea solstitialis, Cichorium endivia, Artemisia annua, Helianthus annuus

ABOUT THIS RECORD

ID: MNEST046169
species: Cichorium endivia
miRNA family: MIR162
source: microPC, original name: miR162

Taxonomy by NCBI:
Cichorium endivia Cichorium Cichoriinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms

SEQUENCE & STRUCTURE

miRNA
TCGATAAACCTCTGCATCCAG

miRNA*
GGATGCAGCGGTTCATCGATC

mismatches: 2
bulges: 0

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pre-miRNA
CTGGATGCAGCGGTTCATCGATCTGTTCCCTAAGCCTGATGAATGAATGAAAAAATAATAAGGAAAAAAACGAAGGTAGGAGATAGAGAGAGAAGTGAGA
GGCACAAGGAATCGGTCGATAAACCTCTGCATCCAG

dot-bracket secondary structure
((((((((((.((((.(((((((.(((((....((((..........(....)................((....))......................)
)))....))))).))))))).)))).))))))))))

UniProt no hits

RFAM MIR162_2: 0.00000003

MORE

miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction: true miRNA
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