miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Cichorium intybus, Lactuca perennis, Lactuca saligna, Lactuca sativa, Lactuca serriola, Lactuca virosa, Taraxacum kok-saghyz, Taraxacum officinale, Cichorium endivia



ABOUT THIS RECORD

ID: MNEST046175
species: Taraxacum officinale
source: microPC, original name: miR156

Taxonomy by NCBI:
Taraxacum officinale Taraxacum Crepidinae Cichorieae Cichorioideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 TGACAGAAGAGAGTGAGCA

miRNA*
 CTCACTTCTCTTGCTGTCA

mismatches: 1
bulges: 2
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pre-miRNA
 TGACAGAAGAGAGTGAGCATATGCAAGCAATTGTATAGAGAGATATGCTCTTGTTGTAATTATGATGCGTGTGCTCACTTCTCTTGCTGTCA

dot-bracket secondary structure
.(((((((((((((((((((((((((((((..(((((......)))))..)))))..........))))))))))))).)))))).))))).


SIMILARITIES
miRBase vvi-MIR156d: 0.000001

PMRD vvi-miR156d: 0.000001

microPC miR156: 5e-46		UniProt no hits

RFAM mir-156: 0.00002

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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