miRNEST 2.0, an integrative microRNA resource :: Browse
Home
Browse miRNAs
Deep-seq predictions
Mirtrons
miRNA genes
Degradomes
Download
Upload
Contact
Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004621
species:
Oryza sativa
miRNA family:
MIRf162
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGCTTGTAACGTTTGACCCA
miRNA*
GTCAAACGTTACATGTAAAA
mismatches:
2
bulges:
0
View larger
pre-miRNA
ATGTACTCCCTCCGTCTCATAATATAAGGGATTTTAAGTTT
TTGCTTGTAACGTTTGACCCA
CTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATT
TTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTG
GTCAAACGTTA
CATGTAAAA
AATCAAAATACCTTATATTGTGGGACAGAGGGAGTAGA
dot-bracket secondary structure
...(((((((((.((((((((((((((((.(((((...(((
((((.((((((((((((((.(
((.(((((((((((((((((((..((.(((.((.....
....(((((.((((...((((......))))...)))))))))..........)).))).))...))))))))))))))))))).))))
)))))))))))
)).))))))
)...))))).)))))))))))))))).)))))))))..
SIMILARITIES
miRBase
osa-MIR818e
:
4e-18
PMRD
osa-miRf11994-akr
:
3e-31
microPC
miR818
:
2e-16
UniProt
no hits
RFAM
MIR806: 5e-70
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
download this record