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Species belonging to selected taxon:
Oryza sativa
ABOUT THIS RECORD
ID:
MNEST004622
species:
Oryza sativa
miRNA family:
MIRf34
source:
miRNEST
Taxonomy by NCBI:
Oryza sativa
Oryza
Oryzeae
Ehrhartoideae
BEP clade
Poaceae
Poales
commelinids
Liliopsida
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
TTGTGGGACAGAGGGAGTAGA
miRNA*
TACTCCCTCCGTCTCATAATA
mismatches:
3
bulges:
0
View larger
pre-miRNA
ATG
TACTCCCTCCGTCTCATAATA
TAAGGGATTTTAAGTTTTTGCTTGTAACGTTTGACCCACTCGTCTTATTCAAATTTTTTTGAAATTATTAATTATT
TTATTTGTGACTTACTTTATTATCTAAAATACTTTAAGCATAACTTTTCATTTTTTATATTTGCAAAAAAAATTTGAATAAGACTAGTGGTCAAACGTTA
CATGTAAAAAATCAAAATACCTTATA
TTGTGGGACAGAGGGAGTAGA
dot-bracket secondary structure
...
(((((((((.(((((((((((
(((((.(((((...(((((((.((((((((((((((.(((.(((((((((((((((((((..((.(((.((.....
....(((((.((((...((((......))))...)))))))))..........)).))).))...))))))))))))))))))).)))))))))))))))
)).)))))))...))))).)))))))
))))))))).)))))))))..
SIMILARITIES
miRBase
osa-MIR818e
:
4e-18
PMRD
osa-miRf11994-akr
:
3e-31
microPC
miR818
:
2e-16
UniProt
no hits
RFAM
MIR806: 5e-70
most similar mature miRNAs
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction:
true miRNA
Source sequences
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