ABOUT THIS RECORDspecies: Manihot esculenta
source: microPC, original name: miR394
Taxonomy by NCBI:
Manihot esculenta Manihot Manihoteae Crotonoideae Euphorbiaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TTGGCATTCTGTCCACCTCC miRNA* AGGTGGGCATACTGCCAA mismatches: 3 bulges: 0 |
pre-miRNA
TTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.(((((((((((....(((.((..((((.......)).))..))))).))))))))))).).))))).
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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TTGGCATTCTGTCCACCTCCCATCTGTAGAAATCTGTCTCTCTCACGAGCTCACATGGAGGTGGGCATACTGCCAA
dot-bracket secondary structure
.(((((.(.(((((((((((....(((.((..((((.......)).))..))))).))))))))))).).))))).
SIMILARITIES| miRBase vvi-MIR394b: 0.0000002 PMRD vvi-miR394b: 0.0000002 microPC miR394: 0.0000002 | UniProt no hits RFAM MIR394: 0.000004 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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