miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Pinus banksiana, Pinus banksiana, Pinus contorta, Pinus contorta, Pinus pinaster, Pinus pinaster, Pinus taeda, Pinus taeda



ABOUT THIS RECORD

ID: MNEST046248
species: Pinus taeda
source: microPC, original name: miR166

Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 CGGACCAGGCTTCATTCCC

miRNA*
 GAATGTTGTCTGGCTCGAC

mismatches: 4
bulges: 0
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pre-miRNA
 GGGAATGTTGTCTGGCTCGACTTCATCCGGATTTGGGCTCCAATGTTCGGATGCCGTCGGACCAGGCTTCATTCCC

dot-bracket secondary structure
(((((((..((((((..((((..(((((((((((((...)))).)))))))))..))))..))))))..)))))))


SIMILARITIES
miRBase pta-MIR166a: 8e-38

PMRD pta-miR166a: 8e-38

microPC miR166: 8e-38		UniProt no hits

RFAM mir-166: 0.00006

Identical with: pta-MIR166a from miRBase (MNEST039420)

MORE

miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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