miRNEST 2.0: an integrative microRNA resource miRNEST 2.0, an integrative microRNA resource :: Browse

Species belonging to selected taxon:

Arachis duranensis, Arachis hypogaea, Arachis ipaensis, Glycine soja, Glycyrrhiza uralensis, Lotus japonicus, Medicago sativa, Phaseolus acutifolius, Phaseolus coccineus, Pisum sativum, Trifolium pratense, Cajanus cajan, Cicer arietinum, Glycine max, Vigna unguiculata, Medicago truncatula, Phaseolus vulgaris



ABOUT THIS RECORD

ID: MNEST046260
species: Glycine max
miRNA family: MIR159
source: microPC, original name: miR159

Taxonomy by NCBI:
Glycine max Glycine Phaseoleae Papilionoideae Fabaceae Fabales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
 ATTGGAGTGAAGGGAGCTCCG

miRNA*
 GAGCTCTCTGCACTCCAGTGT

mismatches: 2
bulges: 0
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pre-miRNA
 TGGAGCTCTCTGCACTCCAGTGTTGAAGGAGGTGATGGTAAACCCTAGCTGCTAATTCATGGTTACCTTTGGCTTCCCATAAGGAAGCATGTGAAAGTCA
TGGGTTTACATGAATATGGAGACGGGGTTGCCTTGATCTTTTGGTATTGGAGTGAAGGGAGCTCCG

dot-bracket secondary structure
.((((((((((.((((((((((..((((((......(((((.((((..((.((((((((((...((((.((((((..((((.(....).)))).))))))
.))))...))))))).)))))..)))))))))....))))))..)))))))))).)))))))))).


SIMILARITIES
miRBase gma-MIR159c: 9e-46

PMRD gma-miR159c: 9e-46

microPC miR319: 6e-90		UniProt no hits

RFAM MIR159: 0.000002

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
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