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Species belonging to selected taxon:
Brassica napus
,
Brassica oleracea var. alboglabra
,
Brassica rapa
,
Raphanus raphanistrum
,
Raphanus raphanistrum subsp. landra
,
Raphanus raphanistrum subsp. maritimus
,
Raphanus sativus
,
Raphanus sativus var. oleiformis
,
Thellungiella halophila
,
Arabidopsis thaliana
,
Brassica oleracea
ABOUT THIS RECORD
ID:
MNEST046265
species:
Arabidopsis thaliana
source:
microPC, original name:
miR160
Taxonomy by NCBI:
Arabidopsis thaliana
Arabidopsis
Brassicaceae
Brassicales
malvids
rosids
core eudicotyledons
eudicotyledons
Magnoliophyta
Spermatophyta
Euphyllophyta
Tracheophyta
Embryophyta
Streptophytina
Streptophyta
Viridiplantae
Eukaryota
cellular organisms
SEQUENCE & STRUCTURE
miRNA
GCCTGGCTCCCTGTATGCCA
miRNA*
GCGTACAAGGAGTCAAGC
mismatches:
2
bulges:
0
View larger
pre-miRNA
GCCTGGCTCCCTGTATGCCA
CGAGTGGATACCGATTTTGGTTTTAAAATCGGCTGCCGGTG
GCGTACAAGGAGTCAAGC
dot-bracket secondary structure
((.(((((((.(((((((((
(..(..(...(((((((((....))))))))))..)..)))
))))))).))))))).))
SIMILARITIES
miRBase
ath-MIR160c
:
1e-39
PMRD
ath-miR160c
:
1e-39
microPC
miR160
:
1e-39
UniProt
no hits
RFAM
mir-160: 2e-38
MORE
miRNEST target predictions: none
non-miRNEST targets: none
HuntMi prediction:
true miRNA
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