ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR159
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGAGAGCTCC miRNA* AGCTTTCTTCAGTCCAACGA mismatches: 1 bulges: 0 |
pre-miRNA
CGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGGC
AAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCC
dot-bracket secondary structure
)(((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..))
)))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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CGGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGGC
AAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCC
dot-bracket secondary structure
)(((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..))
)))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))
SIMILARITIES| miRBase pta-MIR159b: 1.0E-94 PMRD pta-miR159b: 1.0E-94 microPC miR159: 1.0E-94 | UniProt no hits RFAM no hits |
Identical with: pta-miR159b from PMRD (MNEST051554), pta-MIR159b from miRBase |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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