ABOUT THIS RECORDspecies: Pinus taeda
source: microPC, original name: miR159
Taxonomy by NCBI:
Pinus taeda Pinus Pinus Pinaceae Coniferales Coniferopsida Coniferophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA CTTGGATTGAAGAGAGCTCC miRNA* AGCTTTCTTCAGTCCAACGA mismatches: 1 bulges: 0 |
pre-miRNA
GGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGGC
AAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCC
dot-bracket secondary structure
(((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..))
)))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))
SIMILARITIES
MORE
miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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GGAGCTTTCTTCAGTCCAACGAAAGGCCGTATAGGGATGATTCAACTGCTGGTTCATGGACTCTACTATCTTGTAATCCTCGAGGTTCAGTATTGGCGGC
AAGATAATGGTGTGCATGACACGGGAGTCGTATTGCCACTACGCTGTTTTTACTTGGATTGAAGAGAGCTCC
dot-bracket secondary structure
(((((((((((((((((((..((((((.(..(((((.((((.(.(((.(((..(((((.((.(((.((((((((...((...............))..))
)))))).))).)).)))))..))).))).).)))))).)))..).))))))..)))))))))))))))))))
SIMILARITIES| miRBase pta-MIR159b: 1e-94 PMRD pta-miR159b: 1e-94 microPC miR159: 1e-94 | UniProt no hits RFAM no hits |
Identical with: pta-miR159b from PMRD (MNEST051554) |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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