ABOUT THIS RECORDspecies: Helianthus exilis
source: microPC, original name: miR171
Taxonomy by NCBI:
Helianthus exilis Helianthus Heliantheae Heliantheae alliance Asteroideae Asteraceae Asterales campanulids asterids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms
SEQUENCE & STRUCTURE| miRNA TGATTGAGCCGTGCCAATAT miRNA* GTTGGTTCGGTTCAATAAGA mismatches: 2 bulges: 0 |
pre-miRNA
ATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))
SIMILARITIES
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miRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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ATGTTGGTTCGGTTCAATAAGAACTCAATGTTCAAATAGTGCATTGAACGTTGCTTTTTGATTGAGCCGTGCCAATAT
dot-bracket secondary structure
((((((((.(((((((((.((((..((((((((((........))))))))))..)))).))))))))).))))))))
SIMILARITIES| miRBase rco-MIR171a: 0.00000001 PMRD vvi-miR171c: 0.0000009 microPC miR171: 5e-39 | UniProt no hits RFAM MIR171_1: 0.0000003 |
MOREmiRNEST target predictions
non-miRNEST targets: none
HuntMi prediction: true miRNA
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